Package: OryzaProbe 0.2.0

Youming Liu

OryzaProbe: Convert Rice Microarray Probe IDs to RAP-DB Gene IDs

Converts probe identifiers from the rice microarray platforms GPL6864, GPL8852, and GPL2025 to targets from the Rice Annotation Project Database (RAP-DB). Conversion preserves input order, reports unmapped and non-RAP annotations, handles one-to-many mappings explicitly, and can combine multiple probes per target using the mean, maximum, or minimum.

Authors:Youming Liu [aut, cre, cph]

OryzaProbe_0.2.0.tar.gz
OryzaProbe_0.2.0.zip(r-4.7-any)OryzaProbe_0.2.0.zip(r-4.6-any)OryzaProbe_0.2.0.zip(r-4.5-any)
OryzaProbe_0.2.0.tgz(r-4.6-any)OryzaProbe_0.2.0.tgz(r-4.5-any)
OryzaProbe_0.2.0.tar.gz(r-4.7-any)OryzaProbe_0.2.0.tar.gz(r-4.6-any)
OryzaProbe_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
OryzaProbe/json (API)

# Install 'OryzaProbe' in R:

install.packages('OryzaProbe', repos = c('https://lym-bioinfo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lym-bioinfo/oryzaprobe/issues

On CRAN:

4.00 score 214 downloads 7 exports 0 dependencies

Last updated from:d4c3492834. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	190
source / vignettes	OK	167
linux-release	OK	193
macos-release	OK	100
macos-oldrel	OK	90
windows-devel	OK	68
windows-release	OK	65
windows-oldrel	OK	63
wasm-release	OK	97

Exports:probe_annotation probe_annotation_metadata probe_conversion_report probe_conversion_summary probe_convert probeConvert supported_platforms

Dependencies:

Converting rice microarray probe IDs with OryzaProbe

Convert and merge probes | Automatic platform detection | Unmapped, non-RAP, and multi-target annotations | Annotation provenance

Rendered fromOryzaProbe.Rmdusingknitr::rmarkdown

Last update: 2026-09-21
Started: 2026-09-21

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Inspect the bundled probe annotation	probe_annotation
Inspect annotation provenance	probe_annotation_metadata
Inspect a probe conversion	probe_conversion_report
Summarize a probe conversion	probe_conversion_summary
Convert rice microarray probe IDs to annotated targets	probe_convert
Backward-compatible probe conversion interface	probeConvert
List supported rice microarray platforms	supported_platforms