OryzaProbe - Rice Microarray Probe ID Conversion, from Probe ID to RAP-DB ID
Microarray probe ID is not convenient for further
enrichment analysis and target gene selection. The package is
created for the rice microarray probe ID conversion. This
package can convert microarray probe ID from GPL6864
<https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL6864>,
GPL8852
<https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL8852>,
and GPL2025
<https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL2025>
platforms to RAP-DB ID. RAP-DB "The Rice Annotation Project
Database" <https://rapdb.dna.affrc.go.jp> is a well-known
database for rice Oryza sativa, and the gene ID in this
database is widely used in many areas related to rice research.
For multiple probes representing a single gene, This package
can merge them by taking the mean, max, or min value of these
probes. Or we can keep multiple probes by appending sequence
numbers to duplicate the RAP-DB ID.